SNP Profiles of IMC 14   View Data

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 1234567891011121314
_Input profile
CCAGCGTTTTCCTTCCCCAAGGCTAATT
1._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
2._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
3._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
4._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
5._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
6._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
7._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
8._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
9._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
10._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
11._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
12._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
13._GC-04-054-3-18
CCAGCGTTTTCCTTCCCCAAGGCTAATT
14._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
15._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
16._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
17._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
18._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
19._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
20._IMC_14
CCAGCGTTTT_TTCCCCAAGGCTAATT
21._GC-03-030-3-09
CCAGCGTTTT_TTCCCCAAGGCTAATT
22._GC-03-030-3-09
CCAGCGTTTT_TTCCCCAAGGCTAATT
23._IMC_14
CCAGCGTTTT_TTCCCCAAGGCTAATT
24._GC-03-030-3-09
CCAGCGTTTT_TTCCCCAAGGCTAA_
25._IMC_14
CCAGCGTTTT_TTCCCCAAGGCTAA_
26._RUQ_1634
__CG_____CC_GG_AA_
27._IMC_14
CCAGCGTTTTCCTTCC_AAGGCTAATT
28._RUQ_1634
_AGCGTT_______CTAA_
29._RUQ_1634
CTAG_CTTTAACCCTCTAAAACTAGCT
30._GC-03-30-3-9
GGAGCGAAAACCAA__AAGGAGAAAA
31._RUQ_1634
GGAGCGAAAACCAA__AAGGAGAAAA
 1516171819202122232425262728
_Input profile
AAGGCCCCCCGGAACCAAGGGGCTCCAA
1._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
2._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
3._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
4._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
5._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
6._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
7._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
8._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
9._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
10._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
11._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
12._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
13._GC-04-054-3-18
AAGGCCCCCCGGAACCAAGGGGCTCCAA
14._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
15._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
16._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
17._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
18._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
19._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
20._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
21._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
22._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
23._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
24._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
25._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
26._RUQ_1634
____CCGGAA_AAGG__CC_
27._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
28._RUQ_1634
___CCCCGG_CCAAGGGGCTCCAA
29._RUQ_1634
AAGGTTCCGGGGAGCTCCCCTTCTCCAG
30._GC-03-30-3-9
AAGGGGGGGGCC_GGAAGGCC_CC_
31._RUQ_1634
AAGGGGGGGGCC_GGAAGGCC_CC_
 2930313233343536373839   
_Input profile
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
1._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
2._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
3._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
4._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
5._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
6._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
7._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
8._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
9._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
10._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
11._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
12._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
13._GC-04-054-3-18
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
14._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
15._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
16._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
17._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
18._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
19._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
20._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
21._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
22._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
23._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
24._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
25._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
26._RUQ_1634
___AG____AC__X_XX_XX_X
27._IMC_14
GGAATTAG_ACCTGTACTTGGX_XX_XX_X
28._RUQ_1634
_AATTAGCGACCTGTAC__X_XX_XX_X
29._RUQ_1634
GGAACTAACCACCTGTCCTTGGX_XX_XX_X
30._GC-03-30-3-9
GGAAAAAGCGACAGACACTTGGX_XX_XX_X
31._RUQ_1634
GGAAAAAGCGACAGACACTTGGX_XX_XX_X

Input profile: IMC_14

 
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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

1._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

6._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

7._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

8._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

9._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

10._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

11._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._IMC_14 GC-04-054-3-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

17._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

18._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

19._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

21._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

24._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14 RUQ_1634

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._IMC_14

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

28._IMC_14 RUQ_1634

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._IMC_14 RUQ_1634

60.5 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

54.4 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

54.4 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25